⚠ "All genes" loads the full expression matrix (~6 GB of memory) and is slower. Please switch back to HVGs after use — the memory is freed automatically when you do.
Sub-UMAP
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Selections👁⬇×
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Connectome matching
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Main UMAP…
Annotation:
Sub UMAP
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Select a cluster to view sub-UMAP
Annotation:
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Report a Bug
Describe what happened and what you expected. System info is attached automatically.
Paste barcodes
Paste cell barcodes — one per line, or separated by spaces, commas, or tabs. A new selection is created from those found in the current dataset.
…or drop a selection file here — .tsv / .json / .txt exported selection metadata (rowname column; a “selection” column makes one selection per name), or a plain barcode list. Click to browse.
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Propose Annotation
Link a cell selection to connectome neurons. Submitted for review; an email copy is sent to the curators.
In Neuroglancer, select your neurons into the Atlas Annotation IDs tab, copy the ID list, and paste it here. (Pasting the whole Neuroglancer URL also works — IDs are read from the Atlas Annotation IDs layer.)
One or more connectome cell types this selection corresponds to. Auto-filled from the pasted neuron IDs above; edit freely.
Review Annotations
VNC Atlas Explorer — Help
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Dataset Selection
Switch dataset (Full VNC, Neurons, Glia)Tree in sidebar
Neuron embeddings: Stage integrated, Not stage integrated, Primary, SecondaryTree sub-items